Copyright (c) 2016 Wing Ying Chow. MIT License. Hosted on GitHub.
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Input sequences
Type your sequence into the box.
Default sequences are chain regions of mouse collagen I from Uniprot (P11087 and Q01149).
The default stagger scheme refers to Brondijk et al, PNAS 2012.
Leading chain:
Middle chain:
Trailing chain:
Number of residues to stagger:
Highlight residues
Use one letter code.
All input will be automatically capitalised.
Some regex works.
GP finds exactly "GP" (G and P in that order).
For G or P, use [GP].
[A-Z] (square brackets included) matches any one residue.
For G followed by something, use G[A-Z].
For (mouse) essential amino acids, use [VLIFMWTKRH].